Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Cebpa

Cell type

Cell type Class
Blood
Cell type
Myeloid Progenitor Cells
MeSH Description
Stem cells derived from HEMATOPOIETIC STEM CELLS. Derived from these myeloid progenitor cells are the MEGAKARYOCYTES; ERYTHROID CELLS; MYELOID CELLS; and some DENDRITIC CELLS.

Attributes by original data submitter

Sample

source_name
Cebpap30/p30 shRen cells - C/EBPa
cell line
Cebpap30/p30
cell type
myeloid progenitor cell model for p30-driven AML
strain background
C57BL/6
treatment
48 hrs of Doxycycline-treatment

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Total RNA for RNA-seq was isolated using the RNeasy Mini Kit (Qiagen). Libraries were prepared for sequencing using standard Illumina protocols.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
23201238
Reads aligned (%)
92.2
Duplicates removed (%)
17.0
Number of peaks
451 (qval < 1E-05)

mm9

Number of total reads
23201238
Reads aligned (%)
91.9
Duplicates removed (%)
17.1
Number of peaks
478 (qval < 1E-05)

Base call quality data from DBCLS SRA